Microbial Identification Services in India
16S rRNA, 18S rRNA, ITS & Shotgun Metagenomics. Fast, affordable, and publication-ready microbial identification for researchers, industries & institutions across India.
Why Microbial Identification Matters in 2026
Microbes drive 90% of Earth's biochemical processes. Accurate identification is essential for clinical diagnostics, environmental monitoring, food safety, probiotics validation, agriculture, and bioremediation. Traditional culturing misses >99% of microbes. Modern DNA-based methods (16S/18S/ITS amplicon & shotgun metagenomics) reveal the full unculturable microbial world.
At Yaazh Xenomics, we deliver end-to-end microbial identification services using gold-standard Sanger sequencing (ABI 3500/3730xl) & high-throughput NGS (Illumina / Oxford Nanopore) with advanced bioinformatics.
Why Researchers & Industries Choose Us
- Affordable Excellence: Lowest NGS + Sanger sequencing prices in India.
- Free Advanced Bioinformatics: OTU/ASV tables, phylogenetic trees, diversity analysis & custom reports.
- ISO-Certified Quality: Strict contamination controls, clean-room protocols, negative/positive controls.
- Pan-India Service: Free sample pickup all over India (HQ Coimbatore + Branches).
- Fast TAT: 7-10 days Sanger // 15-20 days NGS metagenomics.
- Publication-Ready: Data accepted in high-impact journals, methodology expertly provided.
Our Microbial Identification Technologies
| Method | Target Organisms | Technology | Key Advantages | Best For |
|---|---|---|---|---|
| 16S rRNA Sequencing | Bacteria & Archaea (e.g. Actinomycetes) | Sanger (full-length) or NGS (V3-V4) | Gold standard for bacterial ID, Phylogenetic trees | Pure cultures, environmental samples, probiotics |
| 18S rRNA Sequencing | Fungi, Protists, Algae, Micro-eukaryotes | Sanger (full-length) or NGS (V4-V5) | High accuracy for eukaryotic diversity | Soil, water, marine, gut eukaryotic communities |
| ITS Sequencing | Fungi (yeasts, molds) | Sanger or NGS (ITS1/ITS2) | Highest fungal resolution (species level data) | Fermented foods, clinical fungi, soil mycobiome |
| Shotgun Metagenomics | All microbes + viruses + functional genes | NGS (Illumina/MGI) / Oxford Nanopore long-reads | Strain-level ID, functional pathways (KEGG, COG) | Gut microbiome, AMR studies, novel gene discovery |
Our Complete Workflow (End-to-End)
Sample Collection & DNA Extraction
Optimized kits for soil, water, gut, fecal, clinical, plant, and meat samples. High depletion and yield.
PCR Amplification
Hypervariable regions (16S: V1-V9 or V3-V4; 18S: V4-V5; ITS1/2) using universal primers. Gel verification.
Library Prep & Sequencing
Sanger for pure isolates; Illumina/Nanopore for complex communities. High-depth coverage (>100k reads).
Bioinformatics Analysis (Free standard package)
- Quality trimming, denoising, OTU/ASV clustering
- Taxonomic classification (SILVA, Greengenes, UNITE, PR2, NCBI)
- Alpha/Beta diversity, rarefaction curves, PCoA/Heatmaps
- Phylogenetic trees (ML/NJ), differential abundance
- Functional profiling (PICRUSt2, shotgun pathways)
- AMR/Virulence factors (CARD, VFDB) for shotgun
Publication-Ready Deliverables
Raw FASTQ/ABI files, assembled contigs, taxonomy tables, diversity reports, phylogenetic trees (Newick + PDF), full methodology PDF.
Key Applications in India
- • Gut microbiome & health studies (dysbiosis, probiotics)
- • Environmental monitoring (soil, water, wastewater biodiversity)
- • Food safety & fermentation (dairy, crop, pharma QA/QC)
- • Agriculture & plant-microbe interactions (rhizosphere)
- • Clinical & veterinary pathogen identification
- • Bioremediation & industrial isolates
- • Novel species discovery & phylogenetic research
Frequently Asked Questions
What is the difference between 16S rRNA and shotgun metagenomics?
Do you provide raw data and phylogenetic trees?
Do you also submit the sequence in public databases?
Ready for Accurate Microbial Identification?
Get a free quote for 16S rRNA, 18S, ITS or shotgun metagenomics sequencing today.